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Table 2 In vitro selection experiment analysis of commonly used differential expression tools

From: Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis

Tool

Number up

Number down

BaySeq

8

1,592

SAMseq

7

708

DESeq

21

1,396

DESeq2

32

1,400

ALDEx2

69

0

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Microbiome

ISSN: 2049-2618

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