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Table 2 In vitro selection experiment analysis of commonly used differential expression tools

From: Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis

Tool Number up Number down
BaySeq 8 1,592
SAMseq 7 708
DESeq 21 1,396
DESeq2 32 1,400
ALDEx2 69 0