Table 1 Composition and accuracy of identification of mock community 16S rDNA sequences
From: Perturbation and restoration of the fathead minnow gut microbiome after low-level triclosan exposure
OTU ID | Pipeline assigned taxonomy | Mock community ID (ATCC or GenBank) |
|---|---|---|
OTU13 | k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Shewanellaceae; g__Shewanella; s__ | Shewanella amazonenesis SB2B ATCC: BAA-1098 |
OTU32 | k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__ | Pediococcus pentosaceus ATCC: 25745 |
OTU27 | k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__Bacillus; s__ | Uncharacterized Bacillus isolate GenBank ID: KP025972 |
OTU21 | k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__zeae | Lactobacillus casei ATCC: 334 |
OTU20 | k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Lactococcus; s__ | Lactococcus lactis SK11 ATCC: BAA-493 Lactococcus lactis IL403 |
OTU26 | k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__brevis | Lactobacillus brevis ATCC: 367 |
OTU30 | k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacteriales; f__Enterobacteriaceae; g__; s__ | Escherichia coli K12 GenBank ID: U00096 |
OTU39 | k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__; g__; s__ | Acidothermus cellulolyticus ATCC: 43068 |
OTU294 | k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacteriales; f__Enterobacteriaceae; g__; s__ | Escherichia coli K12 GenBank ID: U00096 |
OTU102 | k__Archaea; p__Euryarchaeota; c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halobacterium; s__ | Halobacterium salinarum NRC-1 ATCC: 700922 |