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Table 1 Genome and metabolic model statistics of the selected microbes

From: Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires

  

Average per taxonomic group

Taxon

Number models

Genome (Mbp)

Genome completea

Number genes

Number reactions

Gap-filled reactionsb

All taxa

301

3.3

95 %

702

875

3 %

 Class

      

Bacilli

68

2.5

95 %

656

860

4 %

Clostridia

61

3.5

96 %

735

839

1 %

Bacteroidia

51

5.3

95 %

764

908

1 %

Actinobacteria

36

2.3

95 %

514

727

10 %

γ-Proteobacteria

25

4.6

95 %

1127

1311

1 %

 Genus

      

Lactobacillus

37

2.3

96 %

597

798

4 %

Bifidobacterium

29

2.2

95 %

505

734

12 %

Bacteroides

43

5.6

96 %

774

909

1 %

  1. aBased on a selection of 107 essential genes [73]
  2. bBased on the total number of reactions in the model. Gap-filling reactions were mostly added by the Model SEED platform
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Microbiome

ISSN: 2049-2618

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