From: A fast and robust protocol for metataxonomic analysis using RNAseq data
Counting Scheme | Bacteria | Bacteria | Fungi | Fungi | Virus | |||||
---|---|---|---|---|---|---|---|---|---|---|
Species level | Genus level | Species level | Genus level | First taxon level | ||||||
TPR | FDR | TPR | FDR | TPR | FDR | TPR | FDR | TPR | FDR | |
Unique count >0 | 0.77 ± 0.12 | 0.45 ± 0.20 | 0.84 ± 0.13 | 0.20 ± 0.19 | 0.88 ± 0.11 | 0.62 ± 0.26 | 0.92 ± 0.08 | 0.56 ± 0.26 | 0.97 ± 0.10 | 0.07 ± 0.09 |
IMSA count >0 | 0.78 ± 0.11 | 0.79 ± 0.16 | 0.84 ± 0.12 | 0.58 ± 0.20 | 0.88 ± 0.11 | 0.70 ± 0.21 | 0.92 ± 0.08 | 0.64 ± 0.23 | 0.97 ± 0.10 | 0.14 ± 0.20 |
p value | 0.376 | <0.001 | 0.620 | <0.001 | 0.985 | 0.106 | 0.971 | 0.178 | 1.000 | 0.126 |