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Table 2 QTL statistics of the standing and active CMM traits in the G15 population

From: Improved detection of gene-microbe interactions in the mouse skin microbiota using high-resolution QTL mapping of 16S rRNA transcripts

 

Trait

Category

Chr

Peak SNP

Position

LOD

CI (Mb)

Phenotypic variance

Size

Region defined in G4

G4 CI (Mb)

G4 trait

DNA

Deltaproteobacteria

Order

8

UNC15609494

121.36

6.21

121.24–121.54

10.05

0.303

No

–

 

Deltaproteobacteria

Order

9

UNC16678197

77.29

5.26

77.10–77.69

8.59

0.594

No

–

 

Un.Bacteroidetes_OTU23

Species

9

JAX00699225

77.88

5.34

77.22–80.12

8.7

2.9

No

–

 

Bradyrhizobium_OTU8

Species

13

UNC22265895

23.92

5.6

23.17–23.93

9.11

0.759

No

–

 

Clostridium_XI_OTU29

Species

13

UNC22262889

23.69

5.29

23.15–24.79

8.64

1.64

No

–

 

RNA

Acinetobacter_OTU51

Species

1

JAX00241740

10.25

7.47

9.95–10.26

11.97

0.315

No

–

 

Prevotellaceae

Family

1

backupUNC010101265

58.43

5.34

58.19–58.49

8.7

0.294

No

–

 

Bacteroides

Genus

1

JAX00257146

81.95

5.09

81.30–81.95

8.32

0.648

No

–

 

Oscillibacter

Genus

3

UNC5110176

40.79

5.46

40.69–40.80

8.9

0.115

No

–

 

Ruminococcaceae

Family

3

UNC030426787

47.47

5.2

46.61–47.74

8.48

1.136

Yes

46–55

Flavobacteria

Cyanobacteria

Staphylococcus_OTU15

Species

3

UNC6336040

136.88

5.79

136.35–136.88

9.41

0.528

No

–

 

Alphaproteobacteria

Order

9

JAX00168342

13.14

5.73

12.78–13.39

9.31

0.602

No

–

 

Streptococcus

Genus

10

JAX00295481

89.09

5.15

89.08–89.23

8.4

0.147

No

–

 

Ralstonia

Genus

10

UNC18732289

111.75

5.29

111.57–113.68

8.63

2.116

No

–

 

Ralstonia_OTU6

Species

10

UNC18732289

111.75

5.76

111.57–112.19

9.36

0.62

No

–

 

Prevotellaceae

Family

12

JAX00324994

8.05

5.56

6.59–8.05

9.05

1.453

No

–

 

Halomonas

Genus

13

JAX00042892

27.28

5.75

25.17–30.24

9.34

5.077

No

–

 

Chao1

Diversity

13

UNC22977994

84.02

5.57

84.00–84.18

9.06

0.187

No

–

 

Streptophyta

Genus

14

JAX00380739

57

5.78

55.05–57.02

9.39

1.965

Yes

56–69

Neisseria

Flavobacteriales

Class

14

UNC24657914

104.81

5.26

104.71–105.39

8.59

0.678

No

–

 

Un.Betaproteobacteria

Genus

15

UNC26160173

95.24

5.24

95.01–95.39

8.55

0.379

Yes

82–101

Herbaspirillum

Epsilonproteobacteria

Order

17

UNC28472672

83.04

5.83

82.58–83.62

9.47

1.05

Yes

76–95

Enterobacteriaceae

Campylobacteraceae

Family

17

UNC28472672

83.04

5.12

82.58–83.62

8.36

1.05

Yes

76–95

Enterobacteriaceae

Campylobacter

Genus

17

UNC28493644

84.45

5.3

84.39–84.47

8.65

0.083

Yes

76–95

Enterobacteriaceae

Serratia_OTU117

Species

18

UNC29400134

61.7

9.41

61.50–61.73

14.83

0.24

No

–

 

Un.Lachnospiraceae_OTU82

Species

19

UNC30107716

25.2

5.78

25.15–25.35

9.39

0.194

No

–

 
  1. LOD scores in italics indicate significance at p ≤ 0.05; peak SNP positions and confidence intervals are given in Mb (from NCBI 37). Phenotypic variance is shown in percent contribution (%) to the total variance of each trait. QTL size is indicated in Mb, and previously defined QTLs in the G4 population are shown
  2. Chr chromosome, Un unclassified, CI confidence interval