| Trait | Category | Chr | Peak SNP | Position | LOD | CI (Mb) | Phenotypic variance | Size | Region defined in G4 | G4 CI (Mb) | G4 trait |
---|---|---|---|---|---|---|---|---|---|---|---|---|
DNA | Deltaproteobacteria | Order | 8 | UNC15609494 | 121.36 | 6.21 | 121.24–121.54 | 10.05 | 0.303 | No | – |  |
Deltaproteobacteria | Order | 9 | UNC16678197 | 77.29 | 5.26 | 77.10–77.69 | 8.59 | 0.594 | No | – |  | |
Un.Bacteroidetes_OTU23 | Species | 9 | JAX00699225 | 77.88 | 5.34 | 77.22–80.12 | 8.7 | 2.9 | No | – |  | |
Bradyrhizobium_OTU8 | Species | 13 | UNC22265895 | 23.92 | 5.6 | 23.17–23.93 | 9.11 | 0.759 | No | – |  | |
Clostridium_XI_OTU29 | Species | 13 | UNC22262889 | 23.69 | 5.29 | 23.15–24.79 | 8.64 | 1.64 | No | – |  | |
RNA | Acinetobacter_OTU51 | Species | 1 | JAX00241740 | 10.25 | 7.47 | 9.95–10.26 | 11.97 | 0.315 | No | – |  |
Prevotellaceae | Family | 1 | backupUNC010101265 | 58.43 | 5.34 | 58.19–58.49 | 8.7 | 0.294 | No | – |  | |
Bacteroides | Genus | 1 | JAX00257146 | 81.95 | 5.09 | 81.30–81.95 | 8.32 | 0.648 | No | – |  | |
Oscillibacter | Genus | 3 | UNC5110176 | 40.79 | 5.46 | 40.69–40.80 | 8.9 | 0.115 | No | – |  | |
Ruminococcaceae | Family | 3 | UNC030426787 | 47.47 | 5.2 | 46.61–47.74 | 8.48 | 1.136 | Yes | 46–55 | Flavobacteria Cyanobacteria | |
Staphylococcus_OTU15 | Species | 3 | UNC6336040 | 136.88 | 5.79 | 136.35–136.88 | 9.41 | 0.528 | No | – |  | |
Alphaproteobacteria | Order | 9 | JAX00168342 | 13.14 | 5.73 | 12.78–13.39 | 9.31 | 0.602 | No | – |  | |
Streptococcus | Genus | 10 | JAX00295481 | 89.09 | 5.15 | 89.08–89.23 | 8.4 | 0.147 | No | – |  | |
Ralstonia | Genus | 10 | UNC18732289 | 111.75 | 5.29 | 111.57–113.68 | 8.63 | 2.116 | No | – |  | |
Ralstonia_OTU6 | Species | 10 | UNC18732289 | 111.75 | 5.76 | 111.57–112.19 | 9.36 | 0.62 | No | – |  | |
Prevotellaceae | Family | 12 | JAX00324994 | 8.05 | 5.56 | 6.59–8.05 | 9.05 | 1.453 | No | – |  | |
Halomonas | Genus | 13 | JAX00042892 | 27.28 | 5.75 | 25.17–30.24 | 9.34 | 5.077 | No | – |  | |
Chao1 | Diversity | 13 | UNC22977994 | 84.02 | 5.57 | 84.00–84.18 | 9.06 | 0.187 | No | – |  | |
Streptophyta | Genus | 14 | JAX00380739 | 57 | 5.78 | 55.05–57.02 | 9.39 | 1.965 | Yes | 56–69 | Neisseria | |
Flavobacteriales | Class | 14 | UNC24657914 | 104.81 | 5.26 | 104.71–105.39 | 8.59 | 0.678 | No | – |  | |
Un.Betaproteobacteria | Genus | 15 | UNC26160173 | 95.24 | 5.24 | 95.01–95.39 | 8.55 | 0.379 | Yes | 82–101 | Herbaspirillum | |
Epsilonproteobacteria | Order | 17 | UNC28472672 | 83.04 | 5.83 | 82.58–83.62 | 9.47 | 1.05 | Yes | 76–95 | Enterobacteriaceae | |
Campylobacteraceae | Family | 17 | UNC28472672 | 83.04 | 5.12 | 82.58–83.62 | 8.36 | 1.05 | Yes | 76–95 | Enterobacteriaceae | |
Campylobacter | Genus | 17 | UNC28493644 | 84.45 | 5.3 | 84.39–84.47 | 8.65 | 0.083 | Yes | 76–95 | Enterobacteriaceae | |
Serratia_OTU117 | Species | 18 | UNC29400134 | 61.7 | 9.41 | 61.50–61.73 | 14.83 | 0.24 | No | – |  | |
Un.Lachnospiraceae_OTU82 | Species | 19 | UNC30107716 | 25.2 | 5.78 | 25.15–25.35 | 9.39 | 0.194 | No | – |  |