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Fig. 1 | Microbiome

Fig. 1

From: Microbial phylogeny determines transcriptional response of resistome to dynamic composting processes

Fig. 1

Changes in ARG transcripts, ARG types, and antibiotics during the whole composting process. a Expression dynamics of resistome in our metatranscriptoms of microbiome covering four typical phases of the whole composting process in PWS and PWSB, and resistome profile in our metagenome of a unique rice straw-adapted (RSA) consortia enriched from the compost habitat; resistome data are shown at the resistance mechanism level, and “Me,” “Th,” “Co,” and “Ma” represent the mesophilic, thermophilic, cooling, and maturing phases, respectively. b Changes in the concentration of tetracyclines (tetracycline (TC), chlortetracycline (CTC), oxytetracycline (OTC), and doxycycline (DOC)), sulfonamides (sulfadiazine (SDZ), sulfamerazine (SMZ), sulfamethoxazole (SMX), and sulfaclozine (SCZ)), and fluoroquinolones (norfloxacin (NFC), ciprofloxacin (CFC), ofloxacin (OFC), and enrofloxacin (EFC)) during the whole composting process. c Changes in the expression level of tetracycline, sulfonamide, and fluoroquinolone resistance genes during the whole composting process. d Changes in the abundance of tetracycline, sulfonamide, and fluoroquinolone resistance genes during the whole composting process. e Correlation matrices between the concentration of antibiotic compounds, the abundance of ARGs, and their expression level in the tetracycline, sulfonamide, and fluoroquinolone resistance; orange boxes represent low-correlation coefficients, whereas blue boxes represent stronger correlations

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