Table 1 Discontinuous MegaBLAST results for the rRNA consensus operons
From: Profiling bacterial communities by MinION sequencing of ribosomal operons
NCBI top hit | Phylum | Bacterium | x coverage | Size (bp) | 16S % ID* | Overlap* |
|---|---|---|---|---|---|---|
gi|270610434|gb|GU187030.1| | Acidobacteria | Acidobacteria bacterium IGE-003 | 91 | 4022 | 83.8 ± 3.1 | 1345 ± 161 |
gi|584432076|gb|KF840371.1| | Acidobacteria | Stenotrophobacter terrae | 59 | 4269 | 82.6 ± 5.0 | 1445 ± 83 |
gi|270610434|gb|GU187030.1|| | Acidobacteria | Acidobacteria bacterium IGE-003 *** | 56 | 4088 | 90.0 ± 4.7 | 622 ± 251 |
gi|270610434|gb|GU187030.1| | Acidobacteria | Acidobacteria bacterium IGE-003 *** | 37 | 3933 | 84.7 ± 2.7 | 1324 ± 128 |
gi|645321086|ref|NR_118138.1| | Actinobacteria | Gaiella occulata | 444 | 4006 | 86.6 ± 2.6 | 1483 ± 69 |
gi|283945692|gb|CP001854.1| | Actinobacteria | Conexibacter woesei | 161 | 4148 | 88.3 ± 3.7 | 1472 ± 85 |
gi|631251774|ref|NR_112972.1| | Actinobacteria | Aciditerrimonas ferrireducens | 98 | 3803 | 87.6 ± 1.4 | 1497 ± 33 |
gi|772393478|gb|KP174569.1 | Actinobacteria | Iamia majanohamensis | 50 | 4257 | 87.2 ± 1.6 | 1509 ± 41 |
gi|566084828|ref|NR_108192.1| | Actinobacteria | Solirubrobacter ginsenosidimutans | 45 | 3655 | 86.1 ± 3.5 | 1446 ± 88 |
gi|343200946|ref|NR_041633.1| | Actinobacteria | Ilumatobacter fluminis | 41 | 4167 | 89.3 ± 1.9 | 1279 ± 38 |
gi|294768454|gb|GU905013.1| | Firmicutes | Enterococcus sp. CSL 7544–3 | 68 | 4167 | 96.7 ± 2.1 | 1491 ± 52 |
gi|219846897|ref|NR_026489.1| | Firmicutes | Vagococcus fluvialis | 46 | 4153 | 97.0 ± 2.1 | 1489 ± 51 |
gi|37961728|gb|AY234571.1| | Gemmatimonadetes | Bacterium Ellin5220 | 316 | 3611 | 84.0 ± 2.7 | 1039 ± 6 |
gi|68146509|emb|AJ867290.1| | Proteobacteria-alpha | Ochrobactrum anthropi | 61 | 4567 | 98.2 ± 0.8 | 1530 ± 24 |
gi|219878237|ref|NR_025376.1 | Proteobacteria-beta | Comomonas nitrativorans | 941 | 4623 | 94.4 ± 1.0 | 1496 ± 40 |
gi|111378460|gb|DQ836252.1| | Proteobacteria-beta | Comomonas denitrificans | 384 | 4585 | 96.3 ± 1.4 | 1501 ± 43 |
gi|698376506|gb|KM210263.1| | Proteobacteria-beta | Castellaniella sp. ADC-27 | 118 | 4652 | 95.2 ± 1.5 | 1502 ± 51 |
gi|589264544|emb|HG916765.1| | Proteobacteria-beta | Castellaniella defragrans | 88 | 4519 | 95.1 ± 1.4 | 1513 ± 43 |
gi|343201701|ref|NR_042427.1| | Proteobacteria-beta | Acidovorax caeni | 80 | 4432 | 95.4 ± 0.8 | 1521 ± 30 |
gi|937501645|gb|KR136349.1| | Proteobacteria-beta | Achromobacter xylosoxidans | 70 | 4093 | 97.6 ± 0.2 | 1521 ± 16 |
gi|219878311|ref|NR_025450.1| | Proteobacteria-beta | Bacterium Ellin6067 | 39 | 3967 | 85.5 ± 0.4 | 1551 ± 10 |
gi|410994849|gb|CP003920.1| | Proteobacteria-epsilon | Sulfuricurvum kujiense | 148 | 4453 | 89.1 ± 3.7 | 1499 ± 45 |
gi|54887524|emb|AJ786786.1| | Proteobacteria-gamma | Xanthomonas sp. R-20819 | 1951 | 4479 | 95.1 ± 1.0 | 1521 ± 27 |
gi|28170769|dbj|AB101447.1| | Proteobacteria-gamma | Xanthomonas axonopodis | 352 | 4471 | 94.7 ± 1.0 | 1531 ± 27 |
gi|828983113|gb|CP011657.1| | Proteobacteria-gamma | Citrobacter freundii CAV1741 | 244 | 4248 | 98.2 ± 0.3 | 1534 ± 11 |
gi|938169631|gb|CP012900.1| | Proteobacteria-gamma | Stenotrophomonas acidaminiphila | 161 | 4272 | 92.5 ± 0.5 | 1253 ± 5 |
gi|28170769|dbj|AB101447.1| | Proteobacteria-gamma | Xanthomonas axonopodis *** | 113 | 4367 | 94.2 ± 1.2 | 1457 ± 30 |
gi|927043620|gb|CP012554.1| | Proteobacteria-gamma | Citrobacter freundii P10159 | 80 | 4177 | 97.9 ± 0.4 | 1536 ± 14 |
gi|927043620|gb|CP012554.1| | Proteobacteria-gamma | Citrobacter freundii P10159 *** | 55 | 4286 | 97.2 ± 0.3 | 1540 ± 11 |
gi|636559888|ref|NR_115948.1| | Proteobacteria-gamma | Lysobacter dokdonensis | 38 | 4361 | 93.7 ± 0.5 | 1545 ± 16 |