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Table 1 MetaPhlAn2, CLARK, and MetaPhlAn2/CLARK overlap results. Count includes each time taxa was classified. Total count refers to counts summed across all samples

From: Metagenomic characterization of ambulances across the USA

Tool

Total genera count

Total species count

Average genera count per sample (±SE)

Average species count per sample (±SE)

MetaPhlan2

5374

5119

13.47 (±0.46)

12.83 (±0.60)

CLARK

26,128

39,015

65.48 (±1.09)

97.78 (±1.65)

MetaPhlan2 and CLARK

4246

2644

10.64 (±0.35)

6.63 (±0.28)