Skip to main content

Table 3 Genes identified in both MCR MAGs and not in the other genomes

From: Metagenomic investigation of vestimentiferan tubeworm endosymbionts from Mid-Cayman Rise reveals new insights into metabolism and diversity

Metabolism

Annotation

Formate Oxidation

NAD-dependent formate dehydrogenase alpha subunit

Oxidation of hydrogen

NAD-reducing hydrogenase subunit hoxf (ec 1.12.1.2)

NAD-reducing hydrogenase subunit hoxh (ec 1.12.1.2)

NAD-reducing hydrogenase subunit hoxu (ec 1.12.1.2)

NAD-reducing hydrogenase subunit hoxy (ec 1.12.1.2)

ABC transporter

Phosphate abc transporter, periplasmic phosphate-binding protein psts (tc 3.a.1.7.1)

Branched-chain amino acid abc transporter, amino acid-binding protein (tc 3.a.1.4.1)

Glycerol-3-phosphate abc transporter, permease protein ugpa (tc 3.a.1.1.3)

abc transporter atp-binding protein uup

Branched-chain amino acid abc transporter, atp-binding protein

abc transporter, atp-binding protein

Oligopeptide/dipeptide abc transporter, atp-binding protein

abc transporter, atp-binding protein

Nucleoside abc transporter, atp-binding protein

Uncharacterized abc transporter, auxiliary component yrbc

Glycerol-3-phosphate abc transporter, permease protein ugpe (tc 3.a.1.1.3)

Branched-chain amino acid abc transporter, amino acid-binding protein (tc 3.a.1.4.1)

Branched-chain amino acid abc transporter, periplasmic substrate- binding protein

Phosphate abc transporter, periplasmic phosphate-binding protein psts (tc 3.a.1.7.1)

Possible abc transporter subunit

abc transporter, permease protein

Branched-chain amino acid abc transporter, amino acid-binding protein (tc 3.a.1.4.1)

Putative abc transporter protein

abc transporter atp-binding protein

abc transporter permease protein

Peptide abc transporter, permease component

Dipeptide-binding abc transporter, periplasmic substrate-binding component (tc 3.a.1.5.2)

abc transporter, permease protein, putative

Nucleoside abc transporter, permease protein 2

Nucleoside abc transporter, permease protein 1

abc transporter, periplasmic substrate-binding protein

Spermidine putrescine abc transporter permease component potc (tc_3.a.1.11.1)

abc transporter, periplasmic spermidine putrescine-binding protein potd (tc 3.a.1.11.1)

Oxidative stress response

Catalase (ec 1.11.1.6)

Host infection, environmental defense, and secretion system

abc-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components

abc-type phosphate/phosphonate transport system periplasmic component

abc-type polar amino acid transport system, atpase component

abc-type transport system involved in multi-copper enzyme maturation, permease component

abc-type tungstate transport system, atp-binding protein

abc-type tungstate transport system, periplasmic binding protein

abc-type tungstate transport system, permease protein

Exopolysaccharide production protein pss

General secretion pathway protein a

General secretion pathway protein d

General secretion pathway protein h

General secretion pathway protein i

General secretion pathway protein j

General secretion pathway protein k

General secretion pathway protein l

General secretion pathway protein m

General secretion pathway protein n

Membrane fusion protein of rnd. family multidrug efflux pump

rnd. multidrug efflux transporter; acriflavin resistance protein

Secretion protein hlyd precursor

Type i secretion system, outer membrane component lape # agga

Type i secretion system, membrane fusion protein lapc

Type i secretion system atpase, lssb family lapb

Type i secretion outer membrane protein, tolc precursor

Type i secretion system atpase, lssb family lapb

Type i secretion system, membrane fusion protein lapc

Type i secretion system, outer membrane component lape # agga

Type ii and iii secretion system family protein

  1. MCR MAGs’s unique gene subunits are not listed herein when other subunits belonging to the same gene were detected in other genomes