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Table 2 Gut scoring matrix (maximum 29)

From: Type 1 diabetes susceptibility alleles are associated with distinct alterations in the gut microbiota

Feature

Score

Description

Colon

Crypt architecture

0

Normal

1

Irregular

2

Moderate crypt loss (10–50%)

3

Severe crypt loss (50–90%)

4

Small/medium ulcers (< 10 crypt widths)

5

Large ulcers (> 10 crypt widths)

Crypt abscesses

0

None

1

1–5

2

6–10

3

> 10

Crypt length (medial colon)

0

< 250 μm

1

250–300 μm

2

300–350 μm

3

350–400 μm

4

> 400 μm

Tissue damage

0

No damage

1

Discrete lesions

2

Mucosal erosions

3

Extensive mucosal damage

Inflammatory cell infiltration

0

Occasional infiltration

1

Increasing leukocytes in lamina propria

2

Confluence of leukocytes extending to submucosa

3

Transmural extension of inflammatory infiltrates

Lamina propria neutrophils (PMN)

0

0–5 PMNs/HPF

1

6–10 PMNs/HPF

2

11–20 PMNs/HPF

3

> 20 PMNs/HPF

Ileum

Inflammatory cell infiltration

0

Occasional infiltration

1

Increasing leukocytes in lamina propria

2

Confluence of leukocytes extending to submucosa

3

Transmural extension of inflammatory infiltrates

Lamina propria neutrophils (PMN)

0

0–5 PMNs/HPF

1

6–10 PMNs/HPF

2

11–20 PMNs/HPF

3

> 20 PMNs/HPF

Paneth cell

0

Normal: small, densely packed granules

1

Irregular: less granules

2

Abnormal: less granules, large vacuolar spaces