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Table 1 Details for human-derived gut bacteria screened for their ability to reduce or utilize TMAO

From: Metabolic retroconversion of trimethylamine N-oxide and the gut microbiota

Isolate*

Identified as

Source

Reference

Facultative anaerobe?

D2(9)

[Clostridium] innocuum

Human faeces

M.L. Jiménez-Pranteda, unpublished

No

L16-FAA1

[Clostridium] ramosum

Human caecum

L. Hoyles, unpublished

No

L12-BSM1

Actinomyces odontolyticus

Human caecum

L. Hoyles, unpublished

No

L6-BSM10

Actinomyces viscosus

Human caecum

L. Hoyles, unpublished

No

L6-FAA7

Bacteroides fragilis

Human caecum

L. Hoyles, unpublished

No

D1(4)

Bacteroides vulgatus

Human faeces

M.L. Jiménez-Pranteda, unpublished

No

L9-FAA7

Bacteroides vulgatus

Human caecum

L. Hoyles, unpublished

No

DSM 20083T

Bifidobacterium adolescentis

Human intestine

DSMZ†

No

LCR26

Bifidobacterium animalis subsp. lactis

Infant faeces

[51]

No

LCR11

Bifidobacterium bidifum

Infant faeces

[51]

No

L25-MRS2

Bifidobacterium bifidum

Human caecum

L. Hoyles, unpublished

No

LCR5

Bifidobacterium breve

Infant faeces

[51]

No

LCR8

Bifidobacterium breve

Infant faeces

[51]

No

LCR1

Bifidobacterium dentium

Infant faeces

[51]

No

DSM 20093T

Bifidobacterium gallicum

Human intestine

DSMZ

No

LCR6

Bifidobacterium longum

Infant faeces

[51]

No

DSM 20088T

Bifidobacterium longum subsp. infantis

Infant intestine

DSMZ

No

LCR2

Bifidobacterium longum subsp. infantis

Infant faeces

[51]

No

DSM 20219T

Bifidobacterium longum subsp. longum

Human intestine

DSMZ

No

LCR3

Bifidobacterium pseudocatenulatum

Infant faeces

[51]

No

L19-MRS1

Bifidobacterium longum subsp. longum

Human caecum

L. Hoyles, unpublished

No

L25-MRS8

Bifidobacterium longum subsp. longum

Human caecum

L. Hoyles, unpublished

No

L26-MRS4

Bifidobacterium animalis subsp. lactis

Human caecum

L. Hoyles, unpublished

No

L26-FAA1

Citrobacter gillenii

Human caecum

L. Hoyles, unpublished

Yes

L8-FAA3

Citrobacter koseri

Human caecum

L. Hoyles, unpublished

Yes

L16-FAA6

Clostridium paraputrificum

Human caecum

L. Hoyles, unpublished

No

L20-BSM1

Clostridium perfringens

Human caecum

L. Hoyles, unpublished

No

D1(9)

Clostridium sporogenes

Human faeces

M.L. Jiménez-Pranteda, unpublished

No

D2(14)

Enterococcus faecalis

Human faeces

M.L. Jiménez-Pranteda, unpublished

Yes

D3(1)

Enterococcus faecalis

Human faeces

M.L. Jiménez-Pranteda, unpublished

Yes

D5(2)

Enterococcus faecalis

Human faeces

M.L. Jiménez-Pranteda, unpublished

Yes

D6(1)

Enterococcus faecium

Human faeces

M.L. Jiménez-Pranteda, unpublished

Yes

D6(5)

Enterococcus gallinarum

Human faeces

M.L. Jiménez-Pranteda, unpublished

Yes

D1(2)

Escherichia coli

Human faeces

M.L. Jiménez-Pranteda, unpublished

Yes

D2(1)

Escherichia coli

Human faeces

M.L. Jiménez-Pranteda, unpublished

Yes

D2(2)

Escherichia coli

Human faeces

M.L. Jiménez-Pranteda, unpublished

Yes

D2(8)

Escherichia coli

Human faeces

M.L. Jiménez-Pranteda, unpublished

Yes

D3(8)

Escherichia coli

Human faeces

M.L. Jiménez-Pranteda, unpublished

Yes

D4(15)

Escherichia coli

Human faeces

M.L. Jiménez-Pranteda, unpublished

Yes

D5(1)

Escherichia coli

Human faeces

M.L. Jiménez-Pranteda, unpublished

Yes

L1-FAA5

Escherichia coli

Human caecum

L. Hoyles, unpublished

Yes

L13-FAA2

Escherichia coli

Human caecum

L. Hoyles, unpublished

Yes

L16-FAA5

Escherichia coli

Human caecum

L. Hoyles, unpublished

Yes

L19-FAA2

Escherichia coli

Human caecum

L. Hoyles, unpublished

Yes

L20-FAA3

Escherichia coli

Human caecum

L. Hoyles, unpublished

Yes

L24-FAA5

Escherichia coli

Human caecum

L. Hoyles, unpublished

Yes

L5-FAA2

Escherichia coli

Human caecum

L. Hoyles, unpublished

Yes

L6-FAA1

Escherichia coli

Human caecum

L. Hoyles, unpublished

Yes

L9-MRS1

Escherichia coli

Human caecum

L. Hoyles, unpublished

Yes

L9-FAA5

Fusobacterium ulcerans

Human caecum

L. Hoyles, unpublished

Yes

L15-FAA9

Hafnia paralvei

Human caecum

L. Hoyles, unpublished

No

L4-FAA5

Klebsiella pneumoniae subsp. pneumoniae

Human caecum

[52]

Yes

L26-MRS5

Lactobacillus fermentum

Human caecum

L. Hoyles, unpublished

No

L26-FAA6

Lactobacillus rhamnosus

Human caecum

L. Hoyles, unpublished

No

L13-FAA10

Parabacteroides johnsonii

Human caecum

L. Hoyles, unpublished

No

D4(1)

Paraclostridium bifermentans

Human faeces

M.L. Jiménez-Pranteda, unpublished

No

L1-FAA6

Pseudomonas aeruginosa

Human caecum

L. Hoyles, unpublished

Yes

D2(4)

Staphyloccoccus hominis

Human faeces

M.L. Jiménez-Pranteda, unpublished

Yes

D1(5)

Streptococcus anginosus

Human faeces

M.L. Jiménez-Pranteda, unpublished

Yes

D5(12)

Streptococcus anginosus

Human faeces

M.L. Jiménez-Pranteda, unpublished

Yes

L25-MRS1

Streptococcus gallolyticus

Human caecum

L. Hoyles, unpublished

Yes

L4-MRS5

Streptococcus oralis

Human caecum

L. Hoyles, unpublished

Yes

L4-MRS1

Streptococcus sanguinis

Human caecum

L. Hoyles, unpublished

Yes

D4(3)

Streptococcus sp.

Human faeces

M.L. Jiménez-Pranteda, unpublished

Yes

L26-MRS7

Streptococcus vestibularis

Human caecum

L. Hoyles, unpublished

Yes

LCR4

Unknown Bifidobacterium

Infant faeces

[51]

No

  1. *Ln- prefix, different numbers indicate isolates recovered from different individuals
  2. †DSMZ, Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures