From: A de novo approach to disentangle partner identity and function in holobiont systems
no SRC | SRC | |
---|---|---|
# reads used in assembly | 48,733,956 | 48,660,697 |
# assembled contigs | 167,023 | 168,899 |
# predicted cds | 75,450 | 74,017 |
# annotated cds | 47,260 | 45,768 |
N50 (bp) | ||
total | 818 | 702 |
host | 277 | |
symbiont | 324 | |
shared | 298 | |
unassigned | 714 | |
remapping rates (%) | ||
total | 85.6 | 90.5 |
host | 65.2 | |
symbiont | 76.2 | |
shared | 81.3 | |
unassigned | 89.7 | |
# chimera | ||
total | 777 | 418 |
host | 4 | |
symbiont | 47 | |
shared | 0 | |
unassigned | 367 | |
Calculation time (min) | ||
total | 330 | 2,783 |
SRC | 2,460 | |
assembly | 330 | 323 |