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Table 2 Overview of sequence reads from all samples assigned to known Candida species

From: CloVR-ITS: Automated internal transcribed spacer amplicon sequence analysis pipeline for the characterization of fungal microbiota

 

Patient samples

 

#15

#33

#38

#44

#50

#64

#77

#96

#97

Candida (genus)

995

1193

700

2632

159

401

4008

33

841

C. albicans

8

0

42

0

0

202

2

0

509

C. dubliniensis

0

0

0

0

0

0

1

32

0

C. ergatensis

1

0

0

0

0

0

0

0

0

C. metapsilosis

0

32

0

0

0

0

0

0

0

C. parapsilosis

0

0

2

57

0

1

2

0

1

C. quercitrusa

986

1107

656

2573

159

198

3999

1

331

C. sp. 3TMS-2011

0

54

0

0

0

0

0

0

0

C. sp. JJP-2009a

0

0

0

0

0

0

1

0

0

C. tropicalis

0

0

0

2

0

0

3

0

0