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Figure 1 | Microbiome

Figure 1

From: PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples

Figure 1

Workflow of the PathoScope 2.0 framework. PathoScope 2.0 consists of four core and two optional analysis modules for metagenomic profiling. Core modules: PathoLib extracts custom genome reference libraries, PathoMap aligns the reads to the reference library and filters host reads, PathoID identifies and estimates the proportions from each genome, and PathoReport provides detailed summary reports of the results. PathoDB provides additional annotation and PathoQC can be used to preprocess the reads prior to alignment.

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Microbiome

ISSN: 2049-2618

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