Table 1 Microbial genes that are differentially abundant in dcl234 and Col-0 root microbiomes

Beta-glucuronidase

uidA

Carbohydrate metabolic process

7.91

1.05E-31

3.2.1.31

Alanine dehydrogenase

AlaDH

Oxidation-reduction process

10.75

8.4E-105

1.4.1.1

Aminoglycoside 3′-Phosphotransferase

neo

Kanamycin-kinase, antibiotic activity

11.21

1.3E-150

2.7.1.95

Aminoglycoside 3′-Phosphotransferase

aphA

Kanamycin-kinase, antibiotic activity

9.52

3.35E-52

2.7.1.95

Ornithine carbamoyltransferase

argF

Arginine biosynthetic process via ornithine; citrulline biosynthetic process

− 3.30

1.09E-06

2.1.3.3

2-Keto-4-carboxy-3-hexenedioate hydratase

ligJ

Lignin catabolic process

− 3.15

2.52E-07

4.2.1.-

Glutamyl-tRNA(Gln) amidotransferase subunit A

gatA

Aspartyl-tRNA aminoacylation

− 3.33

5.23E-07

6.3.5.7